Seqpipe’s Handbook¶
Contents:
- How-to:
- Setup GPF development environment and production data
- How to host sfari-frontpage
- Control loggers in GPF tests
- Use coverage in GPF tests
- Set up Autism Genes Tool
- Use S3 on Seqpipe Ceph filesystem
- How to remotely power-on machines in the office using WoL (Wake on LAN)
- Writing WDAE API documentation
- How to deploy a hello world container in Kubernetes
- Install demo setup of gpf in Google Cloud Kubernetes cluster
- Set up for remote work
- Run gpfjs frontend with impala from e2e container
- Set up E2E tests
- Set up GPFJS and E2E linters
- View e2e tests execution in a docker container
- How to run e2e tests against local gpf/gpfjs
- Set up MITM proxy for downloading conda packages
- Start seqclust in order to access office data
- How to set up CSHL collection deployment in development mode
- How to set up CSHL collection deployment in docker
- How to set up gpf-testing-instances in development mode
- Profiling Python code cheatsheet
- Running GPF’s unit tests
- Seqpipe Guides
- Miscellaneous
